Arabidopsis mRNA polyadenylation machinery: BMC Genomics 9, PLoS One 3, e FEBS Letters , Plant Physiology , Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor AtCPSF30 with other polyadenylation factor subunits. BMC Cell Biology 10, Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies. Characterization of genes encoding poly A polymerases in plants: PLoS One 4, e Ratio-based analysis of differential mRNA processing and expression of a polyadenylation factor mutant pcfs4 using arabidopsis tiling microarray.
PLoS One 6, e Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation. Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. A novel plant in vitro assay system for pre-mRNA cleavage during 3'-end formation. Recent reports from other laboratories that are relevant to mRNA 3' end formation in plants. Cloning and characterization of Arabidopsis homologues of the animal CstF complex that regulates 3' mRNA cleavage and polyadenylation.
J Exp Bot In vitro analysis of transcription initiation and termination from the Lhcb1 gene family in Nicotiana sylvestris: Jin Y, Bian T. Nontemplated nucleotide addition prior to polyadenylation: An allelic series reveals essential roles for FY in plant development in addition to flowering-time control. An exploration of 3'-end processing signals and their tissue distribution in Oryza sativa.
Alternative Splicing in the Control of Flowering Time. Alternative Splicing in Plant Defense. Possible Mechanisms of Alternative Splicing Regulation. Role of Alternative Splicing in Biotic Stresses. Role of Alternative Splicing in Abiotic Stresses.
Current topics in microbiology and immunology. Nuclear pre-mRNA processing in plants. Preface.
Salt Drought and Osmotic Stress. IntronMediated Regulation of Gene Expression.
What Good Are Introns? Direct Gene Regulation by Introns.
Regulation of Splicing by Protein Phosphorylation
Enhancers and Promoters Within Introns. Sequences Involved in IME. The Biochemistry of IME. Nuclear Bodies in Animal Cells. Nuclear Bodies in Plant Cells. Spliceosomal Proteins in Plants. Through novel Web-interfaces, users will have a large range of query options to the underlying relational database.
Extensive development of Web services will integrate PlantGDB as a node in the emerging network of plant databases and resources. The PlantGDB resource is widely used and would continue to provide valuable data and analysis capabilities to the plant research community.
A number of collaborative projects rely on PlantGDB for large-scale analyses and display of their data.
Nuclear pre-mRNA processing in plants|INIS
We plan to work with outreach coordinators from our campuses and nationwide to increase content and visibility of PGROP. We will also be working with colleagues in community and tribal colleges in South Dakota with the goal of increasing participation of their communities in plant genome research and building a bridge between plant genomics and ethobotany.
Access to project outcomes: The primary web sites for this project are www.